Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs113748405 chr5:74427292 C/T 3.22E-14 129 43.68 32.37 4.92 KM Plot
TGCT rs113822821 chr20:44798038 C/T 0.000157 132 37.62 70.6 33.45 KM Plot
TGCT rs113900376 chr6:15223932 C/CT 9.47E-5 128 37.3 45.1 NA KM Plot
TGCT rs113914265 chr10:1107945 CT/C 1.75E-13 133 41.27 70.63 17.1 KM Plot
TGCT rs11392975 chr6:42630793 C/CT 2.46E-8 134 37.62 51.67 20.6 KM Plot
TGCT rs114765053 chr6:15233817 C/T 6.08E-5 133 37.95 45.1 NA KM Plot
TGCT rs114868519 chr6:15218939 C/A 7.25E-5 131 37.62 45.1 NA KM Plot
TGCT rs114876878 chr6:15231042 C/T 6.64E-5 132 37.7 45.1 NA KM Plot
TGCT rs11495382 chr12:42289156 A/T 4.81E-7 132 43.6 42.12 12.95 KM Plot
TGCT rs1153820 chr15:48031966 C/T 1.02E-5 133 16.53 41.42 45.47 KM Plot
TGCT rs116096367 chr6:15228563 C/G 6.64E-5 132 37.7 45.1 NA KM Plot
TGCT rs11610589 chr12:107108137 C/T 3.98E-12 134 24.27 48.12 42.03 KM Plot
TGCT rs11621593 chr14:78224205 C/T 7.38E-5 134 45.47 38.2 18.07 KM Plot
TGCT rs116241313 chr20:58156696 G/A 2.15E-13 132 41.42 41.97 17.1 KM Plot
TGCT rs11654132 chr17:42149134 G/A 0 130 43.68 28.87 0.57 KM Plot